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Research/Pinealon

Cognitive

Pinealon

A synthetic tripeptide bioregulator studied in neurological and gene-expression research.

What It’s Studied For

Pinealon (Glu-Asp-Arg; EDR) is a synthetic linear tripeptide belonging to the Khavinson family of short peptide bioregulators. Researchers have examined it in neuronal cell cultures, rodent models of neurological stress, and molecular-docking studies of peptide–DNA interaction. The published literature spans oxidative-stress assay systems, hypoxia and developmental paradigms, and dendritic-spine morphometry.

  • Neuronal oxidative-stress and cell-viability assays (rat cerebellar granule cells, PC12 cells, neutrophils)
  • Dendritic-spine morphometry in hippocampal and striatal neuronal culture models
  • Rodent CNS-stress paradigms: acute hypoxia, prenatal hyperhomocysteinemia, and streptozotocin-induced metabolic challenge
  • Morris water-maze behavioral assay in rodent offspring and adult models
  • Molecular-docking and biophysical characterization of peptide–DNA major-groove interaction
  • Gene-expression studies in aging brain-cortex cultures examining TPH1, SOD2, and GPX1 promoter contexts

Molecular Profile

Type

Synthetic linear tripeptide (peptide bioregulator)

Molecular formula

C15H26N6O8

Molecular weight

~418.4 g/mol

CAS number

175175-23-2

Amino acids

3

Sequence

Glu-Asp-Arg (EDR); H-L-Glu-L-Asp-L-Arg-OH

Mechanism & Target Class

Pinealon carries no assigned cell-surface or cytoplasmic receptor in the literature. The proposed mode of action is receptor-independent: direct interaction with nuclear DNA and possibly histone proteins, positioned as a transcriptional/epigenetic regulator. Biophysical studies (NMR, viscometry, molecular dynamics) characterize contacts at the N7 and O6 atoms of guanine within the DNA major groove, with divalent Mg²⁺ reported to facilitate binding by screening the phosphate backbone. Molecular-docking analyses map candidate binding sites on promoter sequences of genes including TPH1, SOD2, GPX1, CASP3, PPARA, and PPARG. Cellular readouts measured in culture models include reactive-oxygen-species accumulation, MAPK/ERK1/2 phosphorylation kinetics, cell-cycle phase distribution, antioxidant-enzyme expression (SOD2, GPX1), and pro-apoptotic markers (caspase-3, p53).

Research Focus

Studied in neuronal culture models, rodent CNS-stress paradigms, and molecular-docking analyses of peptide–DNA interaction.

Molecular Identity and Proposed Mechanism

Pinealon is classified as a short peptide bioregulator — a class of synthetic tripeptides conceptually derived from tissue-specific polypeptide preparations (in this case, the CNS-derived preparation Cortexin). Unlike classical receptor ligands, it carries no defined cell-surface or cytoplasmic receptor in the published literature. The proposed mechanism, advanced across reports from Khavinson and colleagues, involves direct interaction with nuclear DNA and possibly histones, positioning gene-transcription regulation as the operative level. Biophysical work by Silanteva et al. (2019) examined the interaction of the EDR tripeptide with double-stranded DNA using spectroscopy, NMR viscometry, and molecular-dynamics simulation, characterizing contacts primarily at guanine N7 and O6 atoms within the major groove, with divalent Mg²⁺ ions facilitating interaction through phosphate-backbone screening. Separately, docking analyses (Khavinson, Lin'kova, Tarnovskaya, 2016; Khavinson et al., 2021) proposed sequence-specific binding to promoter regions of candidate genes including TPH1, PPARA, PPARG, CASP3, SOD2, and GPX1. These biophysical and computational findings constitute the mechanistic framework; orthogonal wet-lab confirmation (ChIP, EMSA, structural biology) has not yet been reported outside modeling and limited biophysics.

In Vitro Oxidative-Stress and Neuronal-Viability Models

The foundational in vitro dataset was reported by Khavinson et al. (2011), using rat cerebellar granule cells, neutrophils, and PC12 pheochromocytoma cells exposed to receptor-dependent (ouabain, homocysteine) and non-receptor (hydrogen peroxide) oxidative challenge. The study employed fluorescence-based ROS measurement, propidium-iodide exclusion for necrotic-cell assessment, ERK1/2 phosphorylation kinetics by western analysis, and flow-cytometric cell-cycle profiling. A related aging brain-cortex culture study (Khavinson et al., 2014) investigated serotonin expression alongside TPH1-promoter docking predictions in an age-context model, using the Glu-Asp-Arg tripeptide together with the structurally distinct Lys-Glu-Asp tripeptide.

Dendritic-Spine Morphometry in Alzheimer's- and Huntington's-Disease Mouse Models

Two experimental lines investigated Pinealon in synaptic-structure contexts. Kraskovskaya et al. (2017) used primary mouse hippocampal neurons exposed to amyloid synaptotoxicity and measured mushroom-spine density as the morphometric endpoint; a published correction was subsequently issued for that paper (2017). A study by Khavinson et al. (2021), conducted in the 5xFAD transgenic mouse line (B6SJL-Tg(APPSwFlLon,PSEN1*M146L*L286V)6799Vas), examined CA1 secondary-dendrite spine density alongside molecular-docking predictions of candidate promoter binding; a 2025 published correction noted a figure-duplication error in that work, with the authors stating that the scientific conclusions were unaffected. A separate investigation (Khavinson et al., 2017) assessed striatal-neuron spine morphology in a Huntington's-disease mouse model; this study appeared in a non-PubMed-indexed venue.

Rodent CNS-Stress Paradigms

Several rodent paradigms examined Pinealon alongside behavioral and neurochemical endpoints. Arutjunyan et al. (2012) used a prenatal maternal methionine-load protocol to induce hyperhomocysteinemia, then assessed offspring using the Morris water-maze and cerebellar-neuron oxidative-stress endpoints (ROS accumulation, propidium-iodide cell death). Hypoxia-model studies — including acute hypoxic hypoxia in aged rats — assessed antioxidant-enzyme activity, caspase-3, and Morris-maze acquisition and retention measures (Khavinson et al., 2014, 2015); one aged-rat study combined Pinealon with the polypeptide preparation Cortexin in both hypoxia and hypothermia conditions. Karantysh et al. (2020) examined Pinealon in the streptozotocin-diabetes rat model using Morris-maze retention and hippocampal NMDA-receptor subunit gene expression measured by real-time PCR as endpoints.

Literature Scope and Provenance

The published body of work is modest in size and substantially concentrated in research groups affiliated with the St. Petersburg Institute of Bioregulation and Gerontology, with V.Kh. Khavinson and N.S. Linkova as recurring authors across primary studies and reviews. Independent, non-affiliated replication is essentially absent from the indexed literature. Several primary papers and reviews appear in lower-impact or Russian-language journals, and one paper on striatal-neuron morphology was published in a non-PubMed-indexed venue. A widely circulated vendor PMID (23199282) is a documented misattribution — that identifier refers to an unrelated publication — and is therefore excluded from this reference set. No registered clinical trial was identified in ClinicalTrials.gov or the WHO International Clinical Trials Registry Platform for this compound. Human observations referenced in review articles and patent literature are non-indexed descriptions, not independently verified trial records, and are not listed as clinical citations here.

Storage & Handling

Lyophilized

-20°C long term

0–4°C short term.

Reconstituted

2–8°C

use within days to weeks; avoid freeze-thaw.

Hygroscopic short peptide; protect from light and moisture.

References

Reviews

  1. 1

    Khavinson VKh, et al. (2022). International Journal of Molecular Sciences — Review of neuroepigenetic mechanisms of short peptides in Alzheimer's-disease research models

    DOI: 10.3390/ijms23084259PubMed 35457077
  2. 2

    Khavinson VKh, Linkova NS, et al. (2021). Molecules — Systematic review of short-peptide regulation of gene expression via DNA and chromatin interaction

    DOI: 10.3390/molecules26227053PubMed 34834147
  3. 3

    Khavinson VKh, Linkova NS, Kozhevnikova EO, Trofimova SV. (2021). Molecules — Review of EDR-peptide gene-expression mechanism in an Alzheimer's-disease research context

    DOI: 10.3390/molecules26010159

Primary research

  1. 4

    Khavinson VKh, et al. (2021). Pharmaceuticals (Basel) — Mouse 5xFAD Alzheimer's-model study examining dendritic-spine morphology and candidate-promoter docking

    DOI: 10.3390/ph14060515PubMed 34071923
  2. 5

    Khavinson VKh, et al. (2025). Pharmaceuticals (Basel) — Published correction to the 2021 5xFAD mouse study (figure-duplication error noted; conclusions stated unaffected)

    DOI: 10.3390/ph18010111
  3. 6

    Karantysh GV, et al. (2020). Neurochemical Journal — Rat streptozotocin-diabetes study of Pinealon with Morris-maze behavioral endpoints and hippocampal NMDA-receptor subunit gene expression by RT-PCR

    DOI: 10.1134/S181971242003006X
  4. 7

    Silanteva IA, et al. (2019). Journal of Physical Chemistry B — Biophysical study of EDR-tripeptide interaction with double-stranded DNA using spectroscopy, NMR viscometry, and molecular dynamics

    DOI: 10.1021/acs.jpcb.8b10359PubMed 30762356
  5. 8

    Kraskovskaya NA, et al. (2017). Bulletin of Experimental Biology and Medicine — In vitro hippocampal-neuron study examining tripeptide effects on mushroom-spine density under amyloid synaptotoxicity

    DOI: 10.1007/s10517-017-3847-2PubMed 28853087
  6. 9

    Kraskovskaya NA, et al. (2017). Bulletin of Experimental Biology and Medicine — Published correction to the 2017 hippocampal-neuron tripeptide study

    DOI: 10.1007/s10517-017-3882-zPubMed 28975591
  7. 10

    Khavinson VKh, et al. (2017). Journal of Neurology and Neuroscience — Mouse Huntington's-disease model study examining EDR-peptide effects on striatal-neuron spine morphology

    DOI: 10.21767/2171-6625.1000166
  8. 11

    Khavinson VKh, Lin'kova NS, Tarnovskaya SI. (2016). Bulletin of Experimental Biology and Medicine — Molecular-docking study of short-peptide binding to gene-expression regulatory sequences

    DOI: 10.1007/s10517-016-3596-7PubMed 27909961
  9. 12

    Khavinson VKh, et al. (2015). Advances in Gerontology — Aged-rat hypoxia and hypothermia behavioral-neurochemical study of Pinealon and Cortexin

    PubMed 28509493
  10. 13

    Khavinson VKh, et al. (2014). Advances in Gerontology — Aged-rat acute hypoxia study examining serum cytokines and brain caspase-3 activity with Cortexin and Pinealon

    PubMed 25051764
  11. 14

    Khavinson VKh, et al. (2014). Bulletin of Experimental Biology and Medicine — Aging brain-cortex culture study examining serotonin expression and TPH1-promoter docking with short peptides

    DOI: 10.1007/s10517-014-2496-y
  12. 15

    Arutjunyan AV, Kozina LS, Stvolinskiy SL, Bulygina ER, Mashkina AP, Khavinson VKh. (2012). International Journal of Clinical and Experimental Medicine — Rat prenatal hyperhomocysteinemia model examining Pinealon with offspring Morris-maze behavioral and cerebellar-neuron oxidative-stress endpoints

    PubMed 22567179
  13. 16

    Khavinson VKh, et al. (2012). Bulletin of Experimental Biology and Medicine — Molecular-cellular study of peptide regulation of melatonin synthesis in rat pinealocyte culture (AANAT/pCREB context)

    DOI: 10.1007/s10517-012-1689-5PubMed 22816096
  14. 17

    Khavinson VKh, et al. (2011). Rejuvenation Research — In vitro neuronal-culture study of Pinealon and ROS levels with proliferative assays in cerebellar granule cells, neutrophils, and PC12 cells

    DOI: 10.1089/rej.2011.1172PubMed 21978084

Primary Database

PubChem CID 10273502↗

Research Use Only

These products are intended for research purposes only and are not for human consumption. Not FDA approved. Not intended to diagnose, treat, cure, or prevent any disease.